References¶

Please cite Corder, Ahanonu, et al. 2019 Science publication or the Ahanonu, 2018 Zenodo release if you used the software package or code from this repository to advance/help your research:

@article{corderahanonu2019amygdalar,
  title={An amygdalar neural ensemble that encodes the unpleasantness of pain},
  author={Corder, Gregory and Ahanonu, Biafra and Grewe, Benjamin F and Wang, Dong and Schnitzer, Mark J and Scherrer, Gr{\'e}gory},
  journal={Science},
  volume={363},
  number={6424},
  pages={276--281},
  year={2019},
  publisher={American Association for the Advancement of Science}
}

@misc{biafra_ahanonu_2018_2222295,
  author       = {Biafra Ahanonu},
  title        = {{ CIAtah : a software package for
                   analyzing one- and two-photon calcium imaging
                   datasets.}},
  month        = December,
  year         = 2018,
  doi          = {10.5281/zenodo.2222295},
  url          = {https://doi.org/10.5281/zenodo.2222295}
}

Turboreg (motion correction)¶

If you used Turboreg to conduct motion correction of your movies, please cite as below.

P. Thévenaz, U.E. Ruttimann, M. Unser, "A Pyramid Approach to Subpixel Registration Based on Intensity," IEEE Transactions on Image Processing, vol. 7, no. 1, pp. 27-41, January 1998. Other relevant on-line publications are available at http://bigwww.epfl.ch/publications/.

@ARTICLE(http://bigwww.epfl.ch/publications/thevenaz9801.html,
  AUTHOR="Th{\'{e}}venaz, P. and Ruttimann, U.E. and Unser, M.",
  TITLE="A Pyramid Approach to Subpixel Registration Based on
          Intensity",
  JOURNAL="{IEEE} Transactions on Image Processing",
  YEAR="1998",
  volume="7",
  number="1",
  pages="27--41",
  month="January",
  note=""
)